Publications (Fabienne MICHELI)
Publications dans des revues internationales à comité de lecture1 (le nom des étudiants de Master/Doctorat est souligné)
2024 - Droc G, Giraud D, Belser C, Labadie K, Duprat S, Cruaud C, Istace B, Dos Santos Menezes F, Curk F, Costantino G, Soriano A, Mournet P, Dereeper A, Miranda M, Marchi E, Santoni S, Santana Silva RJ, Sidibe-Bocs S, Luro F, Choisne N, Maumus F, Hufnagel B, Micheli F, Wincker P, Aury JM, Lemainque A, Ollitrault P. A super-pangenome for cultivated citrus reveals evolutive features during the allopatric phase of their reticulate evolution. BioRxiv, https://doi.org/10.1101/2024.10.17.61847
2024 - Maserti B, Michelozzi M, Cencetti G, Riolo M, La Spada F, Aloi F, Pane A, Bartolini P, Pecori F, Silva EMA, Gesteira AS, Micheli F, Cacciola SO. Modulation of leaf volatiles in two citrus varieties differing in susceptibility to Phytophthora citrophthora infection. PMPP, 133, 102319
2024 - Silva GS, Souza MM, Pamponét VCC, Micheli F, Melo CAF, Oliveira SG, Costa EA. Cytogenomic characterization of transposable elements and satellite DNA in Passiflora L. species. Genes, 15: 418
2024 - Grande PLG, Micheli F. New insights in the evolutionary history of cacao-infecting badnaviruses. PMPP, 130: 102242
2024 - Santos MLC, Santos TA, Lopes NS, Ferreira MM, Alves AMM, Pirovani CP, Micheli F. The selenium-independant phospholipid hydroperoxide glutathione peroxidase from Theobroma cacao (TcPHGPX) protects plant cells against damages and cell death. PPB, 207: 108332
2024 - Sousa ARO, Coelho Filho MA, dos Santos LM, Silva MC, da Cruz ES, Ledo CAS, Soares Filho WS, Costa MGC, Micheli F, Gesteira AS. Water competition in the soil by rootstocks is used to assess drought toplerance in citrus. South African Journal of Botany, 164:23-30
2023 - Lopes NS, Santos AS, Novaes DPS, Pirovani CP, Micheli F. Pathogenesis related protein 10 (PR-10) in resistance to biotic stress: progress in elucidating functions, regulation and modes of action. Frontiers in Plant Science, 14:1193873
2022 - Vasconcelos LM, Bittencourt F, Vidal RO, Silva EMA, Costa EA, Müller BSF, Neves L, Fahrenkrog AM, Dervinis C, Micheli F, Kirst M, Pirovani CP, Gaiotto FA. Transcriptome analysis reveals lipid metabolism genes involved in chaulmoogra oil biosynthesis in tropical tree species. Forest, 13: 1806.
2022 - Santos LF, Silva RJS, Falcão LL, Alves RM, Marcellino LH, Micheli F. Cupuassu (Theobroma grandiflorum [Willd. ex Sprengel] Schumann) fruit development: key genes involved in primary metabolism and stress response. Agronomy 2022, 12, 763.
2022 - Reis SPM, Silva EMS, Gramacho KP, Sena FK, Aragão FJL, Costa MGC, Micheli F. Transgenic tomato expressing an oxalate decarboxylase gene from Flammulina sp. shows inscreased survival to Moniliophthora perniciosa. Scientia Horticulturae, 299 (2022) 111004.
2021 - Sousa ARO, Silva EMA, Coelho Filho MA, Costa MGC, Soares Filho WS, Micheli F, Maserti BE, Gesteira AS. Metabolic responses to drought stress and rehydration in leaves and roots of three Citrus scion/rootstock combinations. Scientia Horticulturae, 292 (2022) 110490
2021 - Gomes DS*, Silva EMA*, Rosa ECA, Gualberto NGS, Souza MAJ, Santos G, Pirovani CP, Micheli F. Identification of a key protein set involved in Moniliophthora perniciosa necrotrophic mycelium and basidiocarp development. FBG, 157 (2021) 103635
2020 - Alves AMM, Reis SPM, Gramacho KP, Micheli F. The glutathione peroxidase family of Theobroma cacao: involvement of oxidative stress during witches' broom disease. IJBM, 164: 3698-3708
2020 - Luro F, Neves CG, Costantino G, Gesteira AS, Paoli M, Ollitrault P, Tomi F, Micheli F, Gibernau M. Effect of environmental conditions on yield and composition of essential oils from citrus cultivated in Bahia (Brazil) and Corsica (France). Agronomy, 10:1256
2020 - Silva EMA, Reis SPM, Argolo CS, Gomes DS, Barbosa CS, Gramacho KP, Ribeiro LF, Silva RJ, Micheli F. Moniliophthora perniciosa development: key genes involved in stress-mediated cell wall organization and autophagy. IJBM 154: 1022–1035
2020 - Silva RJS, Micheli F. RRGPredictor a text-mining-based tool for predicting pathogen-associated molecular pattern receptors (PRRs) and Resistance (R) proteins. Genomics, 112: 2666-2676
2020 - Silva RJS, Alves RM, Gramacho KP, Marcellino LH, Micheli F. Involvement of structurally distinct cupuassu chitinases and osmotin in plant resistance to the fungus Moniliophthora perniciosa. PPB, 148: 142-151
2020 - Santos EC, Pirovani CP, Correa S, Micheli F, Gramacho KP. The pathogen Moniliophthora perniciosa promotes differential proteomic modulation of cacao genotypes with contrasting resistance to witches´ broom disease. BMC Plant Biology, 20: 1
2019 - Santos MA, Paula MFB, Ollitrault F, Rivallan R, Silva EMA, Gesteira AS, Luro F, Garcia D, Ollitrault P*, Micheli F*. Phylogenetic origin of primary and secondary metabolic pathway genes revealed by C. maxima and C. reticulata diagnostic SNPs. Frontiers in Plant Science, 10:1128
2019 - Alves AMM, Menezes SP, Lima EM, Gramacho KP, Andrade BS, Ferreira MM, Pirovani CP, Micheli F. The selenium-binding protein of Theobroma cacao: a thermostable protein involved in the witches' broom disease resistance. PPB, 142: 472–481
2019 - Ferreira MDG, Castro JA, Silva RJS, Micheli F. HVA22 from citrus: a small gene family whose some members are involved in plant response to abiotic stress. PPB, 142: 395-404
2019 - Dória MS, Guedes MS, Silva EMA, de Oliveira TM, Pirovani CP, Kupper KC, Bastianel M, Micheli F. Comparative proteomics of two citrus varieties in response to infection by the fungus Alternaria alternata. IJBM, 136:410-423
2019 - Pamponét VCC, Souza MM, Silva GS, Micheli F, Melo CAF, Oliveira SG, Costa EA, Corrêa RX. Low coverage sequencing for repetitive DNA analysis in Passiflora edulis Sims: citogenomic characterization of transposable elements and satellite DNA. BMC Genomics, 20:262
2019 - Sousa EMR, Argolo CS, Costa MGC, Costa SN, Almeida AAF, Coelho Filho MA, Silva FR, Soares Filho WS, Micheli F, Gesteira AS. Transcriptomic analysis related to the flowering of the citrus hybrid Microcitrangemonia. Online first, Current Plant Biology, DOI:10.1016/j.cpb.2018.12.003
2018 - Neves DM, Santana-Vieira DDS, Doria MS, Freschi L, Ferreira CF, Soares Filho WS, Costa MGC, Coelho Filho MA, Micheli F, Gesteira A. Recurrent water deficit causes alterations in the profile of redox proteins in citrus plants. PPB, 132: 497–507
2018 - Barbosa CS, da Fonseca R, Batista TM, Argolo CS, Barreto M, Amaral DOJ, Silva EMA, Carvalho MR, Pirovani CP, Arevalo E, Solis K, Micheli F, Gramacho KP. Effector mining in draft genomes of Moniliophthora perniciosa and Moniliophthora roreri subpopulations. BMC Genomics 19:509
2018 - Neves CG, Amaral DOJ, Paula MFB, Nascimento LS, Costantino G, Passos OS, Santos MA, Ollitrault P, Gesteira AS, Luro F, Micheli F. Characterization of tropical mandarin collection: implications for breeding related to fruit quality. Scientia Horticulturae, 239: 289-299
2017 - de Azevedo FA, de Andrade Pacheco C, da Cruz Andrade E, Schinor EH, Bastianel M, Cristofani-Yaly M, Marluci da Conceição P, Micheli F and Dhuique-Mayer C. 'Ortanique': A late-maturing tangor (Citrus sinensis × C. reticulata) with high carotenoid content. Fruits, 72: 273-280
2017 - Almeida DSM, Amaral DOJ, Del Bem LEV, Santos EB, Silva RJS, Gramacho KP, Vincent M, Micheli F. Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches’ broom disease. PlosOne 12(10):e0187346
2017 - Neves D, Almeida LA, Santana-Veira DD, Freschi L, Ferreira CF, Soares-Filho W, Costa M, Micheli F, Coelho Filho M, Gesteira A. Recurrent water deficit causes epigenetic and hormonal changes in citrus plants. Scientific Reports 7: 13684
2017 - Lemos LSL, Gramacho KP, Pires JL, Santos RM, Ganem RS, Costa MGC, Micheli F. Development of SNP markers present in expressed genes of the plant-pathogen interaction Theobroma cacao - Moniliophthora perniciosa. Agrotrópica, 29:111 – 118
2017 - Souza JD, Silva EMA, Morillon R, Diego Bonatto, Micheli F, Gesteira AS. Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress. PlosOne 12(5): e0177993
2017 - Castro JA, Gomes MDF, Silva RJS, Andrade BS, Micheli F. Alternative oxidase (AOX) constitutes a small family of proteins in mandarin (Citrus clementina) and sweet orange (Citrus sinensis L. Osb.). PlosOne 12(5):e0176878
2017 - Almeida DSM, Gramacho KP, Cardoso THS, Micheli F, Alvim FC, Pirovani CP. Cacao phylloplane: the first battlefield against Moniliophthora perniciosa, the causal agent of witches' broom disease. Phytopathology. 107(7): 864-871
2017 - Silva RA, Souza G, Lemos LSL, Lopes UV, Patrocínio NGRB, Alves RM, Marcellino LH, Clement D, Micheli F, Gramacho KP. Genome size, cytogenetic data and transferability of EST-SSRs markers in wild and cultivated species of the genus Theobroma L. (Byttnerioideae, Malvaceae). PlosOne 12(2):e0170799
2016 - Santos LF, Silva RJS, Amaral DOJ, Paula MFB, Falcão LL, Legavre T, Alves RM, Marcelino LH*, Micheli F*. Identification of reference genes for expression study in seeds and pulp of Theobroma grandiflorum (Willd. ex Spreng.) Schum. PlosOne 11(8): e0160646
2016 - Santos LF, Fregapani RM, Falcão LL, Togawa RC, Costa MM, Lopes UV, Gramacho KP, Alves RM, Micheli F*, Marcellino LH*. First microsatellite markers developed from cupuassu ESTs: application in diversity analysis and cross-species transferability to cacao. PlosOne, 11(3):e0151074
2016 - Gomes DS, Lopes MA, Menezes SP, Ribeiro LF, Dias CV, Andrade BS, Jesus RM, Pires ABL, Goes-Neto A, Micheli F. Mycelial development preceding basidiocarp formation in Moniliophthora perniciosa is associated to chitin, sugar and nutrient metabolism alterations involving autophagy. FGB 86: 33-46
2015 - Cardoso THS, Freitas ACO, Andrade BS, Sousa AO, Santiago AS, Koop DM, Gramacho KP, Alvim FC, Micheli F, Pirovani CP. TcCYPR04, a cacao papain-like cysteine-protease detected in senescent and necrotic tissues interacts with a cystatin TcCYS4. PlosOne, 10: e0144440
2014 - Menezes SP, Andrade EM, Lima EM, Sousa AO, Andrade BS, Lemos LSL, Gramacho KP, Gesteira AS, Pirovani CP, Micheli F. The pathogenesis-related protein PR-4b from Theobroma cacao presents RNase activity, Ca2+ and Mg2+ dependant-DNase activity and antifungal action on Moniliophthora perniciosa. BMC Plant Biology, 14:161, DOI: 10.1186/1471-2229-14-161
2013 - Carvalho HAS, Silva EMA, Santos SC, Micheli F. Polygalacturonases from Moniliophthora perniciosa are regulated by fermentable carbon sources and possible post-translational modifications. Fungal Genetics and Biology, 60:110–121
2013 - Camillo LR, Filadelfo CR, Monzani PS, Corrêa RX, Gramacho KP, Micheli F, Pirovani CP. Tc-cAPX, a cytosolic ascorbate peroxidase of Theobroma cacao L. engaged in the interaction with Moniliophthora perniciosa, the causing agent of witches' broom disease. PPB, 73 : 254-265
2013 - Silva FAC, Pirovani CP, Menezes SP, Pungartnik C, Santiago AS, Costa MGC, Micheli F, Gesteira AS. Identification of differentially expressed proteins in the pathogen Moniliophthora perniciosa after contact with the antifungal protein TcPR-10. GMR, 12: 4855-4868
2013 - Britto DS, Pirovani CP, Andrade BS, dos Santos TP, Pungartnik C, Cascardo JCM, Micheli F, Gesteira AS. Recombinant β-glucanase from Theobroma cacao impair Moniliophthora perniciosa mycelial growth. Molecular Biology Reports 40 : 5417-5427
2013 - Carvalho HAS, Ribeiro LF, Pirovani CP, Gramacho KP, Micheli F. Activity of polygalacturonases from Moniliophthora perniciosa depends on fungus culture conditions and is enhanced by Theobroma cacao extracts. PMPP 83: 40-50
2013 - Santos RMF, Silva SDVM, Sena KF, Micheli F, Gramacho KP. Kinetics and histopathology of the cacao-Ceratocystis cacaofunesta interaction. Tropical Plant Biology, 6: 37-45
2013 - Andrade BS, Villela-Dias C, Gomes DS, Micheli F, Góes-Neto A. The activity of DNA and RNA polymerases from Moniliophthora perniciosa mitochondrial plasmid may reveals a self-defense mechanism against oxidative stress. GMR, 12: 1944-1950
2013 - Santos RMF, Clement D, Lemos LSL, Legavre T, Lanaud C, Schnell RJ, Pires JL, Lopes UV, Micheli F*, Gramacho KP*. Identification, characterization and mapping of EST-derived SSRs from cacao-Ceratocystis cacaofunesta interaction. Tree Genetics and Genomes, 9: 177-127
2012 - Menezes SP, Santos JL, Cardoso THS, Pirovani CP, Micheli F, Noronha FSM, Alves AC, Faria AMC, Gesteira AS. Evaluation of the allergenicity potential of TcPR10 protein from Theobroma cacao. PLoS ONE, 7: e37969, 10.1371/journal.pone.0037969
2012 - Santos RMF, Lopes UV, Silva SDVM, Micheli F, Clement D, Gramacho KP. Identification of QTLs linked to Ceratocystis wilt resistance in cacao. Molecular Breeding, 4: 1563-1571
2012 - Hora Junior BT, Poloni JF, Lopes MA, Villela-Dias C, Gramacho KP, Sabau X, Mauro SMZ, Cascardo JCM, Gesteira AS, Bonatto D, Micheli F. Transcriptomics and systems biology analysis in identification of specific pathways involved in cacao resistance and susceptibility to witches’ broom disease. Molecular Biosystems, 8: 1507-1519
2011 - Villela-Dias C, Mendes JS, dos Santos AC, Pirovani CP, Gesteira AS, Micheli F, Gramacho KP, Hammerstone J, Mazzafera P, Cascardo JCM. Hydrogen peroxide formation in cacao tissues infected by the hemibiotrophic fungus Moniliophthora perniciosa. Plant Physiology and Biochemistry, 49: 917-922
2011 - Soares VLF, Rodrigues SM, de Oliveira TM, de Queiroz TO, Lima LS, da Hora Júnior BT, Gramacho KP, Micheli F, Cascardo JCM, Otoni WC, Gesteira AS, Costa MGC. Unraveling new genes associated to seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis. Molecular Biology Reports, 38: 1329-1340
2010 - Pirovani CP, Santiago AS, dos Santos LS, Micheli F, Margis R, Gesteira AS, Alvim FC, Pereira GAG, Cascardo JCM. Theobroma cacao cystatins impair Moniliophthora perniciosa mycelial growth and are involved on postponing cell death symptoms. Planta, 232: 1485-97
2010 - Lopes MA, da Hora Junior BT, Dias CV, dos Santos GC, Gramacho KP, Cascardo JCM, Gesteira AS, Micheli F. Expression analysis of transcription factors from cacao-Moniliophthora perniciosa interaction. Genetics and Molecular Research, 9: 1279-1297
2010 - Lima LS, Gramacho K, Pires JL, Clément D, Lopes U, Carels N, Gesteira A, Gaiotto F, Cascardo J, Micheli F. Development, characterization, validation and mapping of SSRs derived from Theobroma cacao L.-Moniliophthora perniciosa interaction ESTs. Tree Genetics and Genomes, 6 : 663-676
2009 - Lima LS, Gramacho K, Carels N, Novais R, Gaiotto F, Lopes U, Gesteira A, Zaidan H, Cascardo J, Pires JL, Micheli F. Single nucleotide polymorphisms from Theobroma cacao expressed sequence tags associated with witches’ broom disease in cacao. Genetics and Molecular Research, 8 : 799-808
2009 - Pungartnik C, Silva AC, Melo SA, Gramacho K, Cascardo JCM, Brendel M, Micheli F, Gesteira AS. High-affinity copper transport and Snq2 export permease 1 of Saccharomyces cerevisiae modulate cytotoxicity of PR-10 from Theobroma cacao. Molecular Plant Microbe Interactions, 22: 39-51
2008 - Lima LS, Gramacho KP, Gesteira AS, Lopes UV, Gaiotto FA, Zaidan HA, Pires JL, Cascardo JCM, Micheli F. Characterization of microsatellites from cacao-Moniliophthora perniciosa interaction expressed sequence tags. Molecular Breeding, 22: 315-318
2008 - Pirovani CP, Carvalho HAS, Machado R, Gomes DS, Alvim FC, Pomella AWV, Gramacho K, Cascardo JCM, Pereira G, Micheli F. Protein extraction for proteome analysis from cacao leaves and meristems, organs infected by Moniliophthora perniciosa, the causal agent of the witches’ broom disease. Electrophoresis, 29: 2391-2401
2008 - Siedlecka A, Wiklund S, Peronne A-M, Micheli F, Les’niewska J, Sethson I, Edlund U, Richard L, Sundberg B, Mellerowicz E. Pectin methyl esterase inhibits intrusive and symplastic cell growth in developing wood cells of Populus. Plant Physiology, 146: 554-565
2008 - Lopes MA, Gomes DS, Koblitz MGB, Pirovani CP, Cascardo JCM, Góes-Neto A, Micheli F. Use of response surface methodology to examine chitinase regulation in the basidiomycete Moniliophthora perniciosa. Mycological Research, 112: 399-406
2007 - Ceita GO, Macêdo JNA, Santos TB, Alemanno L, Gesteira AS, Micheli F, Mariano AC, Gramacho KP, Silva DC, Meinhardt L, Mazzafera P, Pereira GAG, Cascardo JCM. Involvement of calcium oxalate degradation during programmed cell death in Theobroma cacao tissues triggered by the hemibiotrophic fungus Moniliophthora perniciosa. Plant Science, 173:106-117
2007 - Gesteira A*, Micheli F*, Carels N, Silva AC, Gramacho KP, Schuster I, Macedo JN, Pereira GAG, Cascardo JCM. Comparative analysis of expressed genes from cacao meristems infected by Moniliophthora perniciosa. Annals of Botany, 100 :129-140
2007 - Garcia O, Macêdo J, Tiburcio R, Zapparoli G, Rincones J, Bittencourt L, Ceita G, Micheli F, Gesteira A, Mariano A, Schiavinato M, Medrano FJ, Meinhardt L, Pereira G, Cascardo J. Characterization of necrosis and ethylene inducing proteins (NEP) in the hemibiotrophic basidiomycete Moniliophthora perniciosa the causal agent of the witches’ broom in Theobroma cacao. Mycological Research, 111:443-455
2007 - Godiard L*,Niebel A*, Micheli F, Gouzy J, Ott T, Gamas P. Identification of new potential regulators of the Medicago truncatula-Sinorhizobium meliloti symbiosis using a large scale Suppression Subtractive Hybridization approach. Molecular Plant Microbe Interactions, 20: 321-332
2003 - Gesteira A, Micheli F, Ferreira CF, Cascardo J. Isolation and purification of functional total RNA from different organs of cocoa tree during its interaction with the pathogen Crinipellis perniciosa. BioTechniques, 35: 494-500
2002 - Journet E-P, van Tuinen D, Gouzy J, Crespeau H, Carreau V, Farmer M-J, Niebel A, Schiex T, Jaillon O, Chatagnier O, Godiard L, Micheli F, Kahn D, Gianinazzi-Pearson V, Gamas P. Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis. Nucleic Acids Research, 30: 5579-5592
2001 - Micheli F. Pectin methylesterases : cell wall enzymes with important roles in plant physiology. Trends in Plant Science, 6 : 414-419
2000 - Micheli F, Sundberg B, Goldberg R, Richard L. Radial distribution pattern of pectin methylesterases across the cambial region of hybrid aspen at activity and dormancy. Plant Physiology,124: 191-199
1998 - Micheli F, Holliger C, Goldberg R, Richard L. Characterisation of the pectin methylesterase-like gene AtPME3: a new member of a gene family comprising at least twelve genes in Arabidopsis thaliana. Gene, 220: 13-20
Articles dans des ouvrages:
2022 - Menezes FS, Mucherino-Muñoz JJ, Ferreira CA, Chaves SFS, Barbosa C, Lemos LSL, Jordana N, Carvalho M, Pires JL, Silva RJS, Gramacho KP, Alves RM, Corrêa RX, Micheli F. Genomic designing for biotic stress resistant cocoa tree. In: Genomic designing for biotic stress resistant technical crops. Chittaranjan Kole Ed. Springer Nature. pp 49–113. Book Chapter.
2010 - Micheli F, Guiltinan M, Gramacho KP, Wilkinson MJ, Figueira A, Cascardo JCM, Maximova S, Lanaud C. Functional genomics of cacao. Advances in Botanical Research, 55: 119-177 (IF: 2.319).
2002 - Micheli F, Ermel FF, Bordenave M, Richard L and Goldberg R. Cell walls of woody tissues: cytochemical, biochemical and molecular analysis of pectins and pectin methylesterases. In: Wood formation in trees: developmental cell biology techniques, Ed. NJ Chaffey, Harwood Academic Publishers. pp 179-200.
2000 - Micheli F, Bordenave M and Richard L. Pectin methylesterases: possible markers for cambial derivative differentiation? In: Cambium: the biology of wood formation, Eds Savidge, Barnett and Napier, Bios scientific publishers. pp 295-304.
* Les auteurs ont contribués de forme égale au travail.