Vladimir Grosbois, Guillaume Fournié, Raphaël Duboz, Flavie Goutard, Timothée Vergne, Marisa Peyre. Quantitative Methods to Evaluate Health Surveillance Effectiveness. BookChapter in Principles for Evaluation of One Health Surveillance: The EVA Book. Marisa Peyre, François Roger, Flavie Goutard Editors. p195 - 217. Elsevier. 2022. http://dx.doi.org/10.1007/978-3-030-82727-4_10
Guillaume Fournié, Alexis Delabouglise, Raphaelle Metras, Younjung Kim, Raphaël Duboz. Network Analysis for Surveillance Design and Evaluation. . BookChapter in Principles for Evaluation of One Health Surveillance: The EVA Book. Marisa Peyre, François Roger, Flavie Goutard Editors. p195 - 217. Elsevier. 2022. http://dx.doi.org/10.1007/978-3-030-82727-4_11
Pauline Ezanno; Sébastien Picault; Gaël Beaunée; Xavier Bailly; Facundo Munoz; Raphaël Duboz; Hervé Monod; Jean-François Guégan. Research perspectives on animal health in the era of artificial intelligence. Veterinary Research, 52(1), Dec. 2021. http://dx.doi.org/10.1186/s13567-021-00902-4
Michel de Garine-Wichatitsky, Aurélie Binot, John Ward, Alexandre Caron, Arthur Perrotton, Helen Ross, Hoa Tran Quoc, Hugo Valls-Fox, Iain J. Gordon, Panomsak Promburom, Rico Ancog, Richard Kock, Serge Morand, Véronique Chevalier, Will Allen, Waraphon Phimprapha, Raphaël Duboz, Pierre Echaubard. "Health in" and "Health of" Social-Ecological Systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. Dec 2021. http://dx.doi.org/10.3389/fpubh.2020.616328
R. Franceschini and R. Duboz. Systèmes multi-agents et DEVS, une petite histoire commune. In proceedings Les journées Francophones de la Modélisation et de la Simulation (JFMS), Cépadues eds. p40-51, 2020.
J. Cappelle, T. Hoem, V. Hul, N. Furey, K. Nguon, S. Prigent, L. Dupon, S. Ken, C. Neung, V. Hok, L. Pring, T. Lim, S. Bumrungsri, R. Duboz, P. Buchy, S. Ly, V. Duong, A. Tarantola, A. Binot and P. Dussart. Circulation and risk perception of Nipah virus at human flying fox interfaces in Cambodia. Bulletin WHO, 98:539-547, 2020. https://www.who.int/bulletin/volumes/98/8/20-254227.pdf
Raphaël Duboz, Pierre Echaubard, Panomsak Promburom, Margaret Kilvington, Helen Ross, Will Allen, John Ward, Guillaume Deffuant, Michel de Garine-Wichatitsky, Aurélie Binot. Systems thinking in practice: participatory modelling as a foundation for integrated approaches to health. Concepts and experiences in framing, integration and evaluation of One Health and EcoHealth. Frontiers in Veterinary Sciences. 17 dec. 2018. https://doi.org/10.3389/fvets.2018.00303
Bernard Zeigler, Mamadou Kaba Traore, Grégory Zacharewicz and Raphaël Duboz. Value-based Learning Healthcare Systems: Integrative modelling and simulation. IET book. Nov. 2018. ISBN: 978-1-78561-326-5
Alpha Oumar II Diallo, Véronique Chevalier, Julien Cappelle, Veasna Duong, Didier Fontenille, Raphaël Duboz. Does direct transmission between pigs contribute to Japanese Encephalitis virus circulation? A modelling approach in Cambodia. To appear in Plos One. 2018 http://dx.doi.org/10.1371/journal.pone.0201209
Traoré Mamadou, Zacharewicz Gregory, Duboz Raphaël, Zeigler Bernie. Modeling and Simulation Framework for Value-based Healthcare Systems. Simulation,Transactions of the Society for Modeling and Simulation International. 4th June, 2018. http://dx.doi.org/10.1177/0037549718776765
Benjamin Roche, Raphaël Duboz. Individual-based model for public health. Book Chapter in Handbook of Statistics 37. Disease Modelling and Public Haelth, part B, p347-365, Arni S.R. Srinivasa Rao, Saumyadipta Pyne, C.R. Rao, eds, Elsevier, 2017 ISBN: 9780444639752.
Baudon E., Fournié G., Hiep D.T., Pham T.T.H., Duboz R., Gély M., Peiris M., Cowling B.J., Ton V.D., Peyre M.I.. 2017. Analysis of swine movements in a province in Northern Vietnam and application in the design of surveillance strategies for infectious diseases. Transboundary and Emerging Diseases, 411 (424) : p. 411-424. http://dx.doi.org/10.1111/tbed.12380
Duboz R. and Binot A. Animal and human health: tackling uncertainty through participatory modelling and simulation. 2017. Perspective - Cirad (41), 4 p. http://dx.doi.org/10.18167/agritrop/00043
Delabouglise A., Antoine-Moussiaux N., Tatong D., Chumkaeo A., Binot A., Fournié G., Pilot E., Phimpraphi W., Kasemsuwan S., Paul M., Duboz R., Salem G., Peyre M.I.. 2016. Cultural practices shaping zoonotic diseases surveillance: The case of highly pathogenic avian influenza and Thailand native chicken farmers. Transboundary and Emerging Diseases : 12 p. http://dx.doi.org/10.1111/tbed.12506
Molia S., Boly I.A., Duboz R., Coulibaly B., Guitian J., Grosbois V., Fournié G., Pfeiffer D.U.. 2016. Live bird markets characterization and trading network analysis in Mali: implications for the surveillance and control of avian influenza and Newcastle disease. Acta Tropica, 155 : p. 77-88. http://dx.doi.org/10.1016/j.actatropica.2015.12.003
Aurelie Binot · Raphaël Duboz · Panomsak Promburom · Waraphon Phimpraphai · Julien Cappelle · Claire Lajaunie · Flavie Goutard · Tanu Pinyopummintr · Muriel Figuié · François. A framework to promote collective action within the One Health community of practice: Using participatory modelling to enable interdisciplinary, cross-sectoral and multi-level integration. 2015, One Health, Volume 1, pages 44–48. doi:10.1016/j.onehlt.2015.09.001
Baudon, E., Fournié, G., Hiep, D. T., Pham, T. T. H., Duboz, R., Gély, M. Peiris, M. Cowling, B. J. Ton, V. D., Peyre, M. Analysis of swine movements in a province in Northern Vietnam and application in the design of surveillance strategies for infectious diseases. 2015. Transboundary and Emerging Diseases. p1865-1682. doi:10.1111/tbed.12380
N. Pradhan, H. Habib, M. Venkatappa, T. Ebbers, R. Duboz, O. Shipin Framework Tool for a Rapid Cumulative Effects Assessment: Case of a Prominent Wetland in Myanmar. Journal of Environmental Assessment and Monitoring. 2015 Jun;187(6):4508. doi:10.1007/s10661-015-4508-4
F L Goutard, A Binot, R Duboz, H Rasamoelina-Andriamanivo, M Pedrono, D Holl, M I Peyre, J Cappelle, V Chevalier, M Figuié, S Molia, F L Roger. How to Reach the Poor? Surveillance in low-income countries, lessons from experiences in Cambodia and Madagascar. Preventive Veterinary Medicine. 02/2015; doi:10.1016/j.prevetmed.2015.02.014
Rasamoelina-Andriamanivo H., Duboz R., Lancelot R., Maminiaina O.F., Jourdan M., Rakotondramaro T.M.C., Rakotonjanahary S.N., Servan de Almeida R., Rakotondravao, Durand B., Chevalier V.. 2014. Description and analysis of the poultry trading network in the Lake Alaotra region, Madagascar: Implications for the surveillance and control of Newcastle disease. Acta tropica, 135 : 10-18. [20140417]. http://dx.doi.org/10.1016/j.actatropica.2014.03.008
Ratchaphon Samphutthanon, Nitin Kumar Tripathi, Sarawut Ninsawat and Raphael Duboz. Spatio-Temporal Distribution and Hotspots of Hand, Foot and Mouth Disease (HFMD) in Northern Thailand. Int. J. Environ. Res. Public Health 2014, 11(1), 312-336; doi:10.3390/ijerph110100312
Lucie Collineau, Raphaël Duboz, Mathilde Paul, Marisa Peyre, Flavie Goutard, Sinel Holl and François Roger. Application of loop analysis for the qualitative assessment of surveillance and control in veterinary epidemiology. Emerging Themes in Epidemiology 2013, 10:7 http://dx.doi.org/10.1186/1742-7622-10-7
R. Duboz. Weighted Activity and Costing of Surveillance and Control in Animal Epidemiology. Activity-Based Modeling & Simulation ACTIMS’2012, May 28 - June 1, Cargese, France, ITM Web of Conferences 1, 01002, 2013. pdf here.
Raphaël Duboz et Jean-Pierre Müller. Modélisation des socio-écosystèmes. Instrumenter le dialogue multidisciplinaire. Book chapter in Epistémologie de la modélisation et de la simulation, p865-896. dir. Franck Varenne & Marc Silberstein, Éditions Matériologiques, 974p, 2013. Order here
Kishoj Bajracharya and Raphael Duboz. Comparison of three agent-based platforms with a simple epidemiological model (WIP). Theory of Modeling & Simulation Symposium, SpringSim Multi-Conference, p362-367. Sans Diego CA, USA, April, 7-10 2013
Nicolas G., Durand B., Duboz R., Rakotondravao R., Chevalier V. Description and analyses of trading network of cattle on the Highlands of Madagascar and Potential role in the diffusion of Rift Valley Fever Virus. Available online 4 January 2013, Acta Tropica. http://dx.doi.org/10.1016/j.actatropica.2012.12.013
Raphaël Duboz and Jean-Christophe Soulié. Modeling and simulation of living systems as systems of systems. Book Chapter in Guide to Modeling and Simulation of Systems of Systems, Simulation Foundations, Methods and Applications. Bernard P. Zeigler and Hessam S. Sarjoughian. L.G. Birta series editor, Springer,-Verlag London eds, 2013. http://dx.doi.org/10.1007/978-0-85729-865-2_1
Bonté B, Mathias J-D, Duboz R. Moment Approximation of Infection Dynamics in a Population of Moving Hosts. PLoS ONE 7(12): e51760, 2012. doi:10.1371/journal.pone.0051760
B. Bonté, R. Duboz and J.P. Muller. Modeling the Minsky triad: A Framework to Perform Reflexive M&S Studies. In the proceedings of the Winter Simulation Conference (ACM/IEEE), C. Laroque, J. Himmelspach, R. Pasupathy, O. Rose, and A. M. Uhrmacher, eds. Berlin, Germany December 9-12 2012. pdf here.
Emilie Vallée, Agnès Waret-Szkuta, Hassen Chaka, Raphaël Duboz, Melesse Balcha, Flavie Goutard. Analysis of traditional poultry trader networks to improve risk-based surveillance. The Veterinary Journal, available online 3 July 2012 http://dx.doi.org/10.1016/j.tvjl.2012.05.017.
Duboz R., Bonté B., Quesnel G. 2012. Vers une spécification des modèles de simulation de systèmes complexes. Studia Informatica Universalis. 10: 7-37
Gauthier Quesnel, Eric Ramat, Jean-Christophe Soulié, David Duvivier, Raphaël Duboz. 2012. Virtual Laboratory Environment : un environnement de multimodélisation et de simulation de systèmes complexes. Studia Informatica Universalis. 10: 205-234
Duboz R., Versmisse D., Travers M., Ramat E., Shin Y.J. 2010. Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model. Ecological modelling, 221 (5) : 840-849.
Quesnel G., Duboz R., Ramat E. 2009. The Virtual Laboratory Environment. An operational framework for multi-modelling, simulation and analysis of complex dynamical systems. Simulation modelling practice and theory, 17 (4) : 641-653.
Bonte B., Duboz R., Quesnel G., Müller J.P. 2009. Recursive simulation and experimental frame for multiscale simulation. In proceedings of the Summer Computer Simulation Conference, p164-172, 2009-07-13/2009-07-16, Istambul, Turque
R. Duboz, D. Versmisse, G. Quesnel, A. Muzzy and É. Ramat, 2006. Specification of Dynamic Structure Discrete Event Multiagent Systems, In the conference proceedings of Agent Directed Simulation (Spring Simulation Multiconference) April 2-6, Huntsville, Alabama, USA.
R. Duboz and C. Cambier, 2005. Small world properties in a DSDEVS model of ecosystem, In proceedings of the Open International Conference on Modeling and Simulation - OICMS 2005, Clermont-Ferrrand, France, pp 65-71.
G. Quesnel, R. Duboz, D. Versmisse and É. Ramat, 2005. DEVS Coupling of Spatial and Ordinary Differential Equations: VLE framework, In proceedings of the Open International Conference on Modeling and Simulation - OICMS 2005, Clermont-Ferrrand, France, pp 281-294.
G. Quesnel, R. Duboz and É. Ramat, 2004. DEVS wrapping: A study case, In proceedings of the CMS conference, 28-30 octobre, Genoa, Italy, pp 374-382.
R. Duboz, É. Ramat et P. Preux. 2003. Scale transfer modelling: Using emergent computation for coupling an ordinary differential equation system with a reactive agent model, Systems Analysis Modelling Simulation. Taylor and Francis eds. Vol. 43, No. 6, June 2003, pp. 793-814.
Q. Quesnel, R. Duboz, É. Ramat. 2003.Comparaison d'approches de simulations distribuées à évènements discrets d'entités spatialisées : ISDM revue en ligne : http://isdm.univ-tln.fr/ http://isdm.univ-tln.fr/PDF/isdm13/isdm13a125_quesnel.pdf
R. Duboz, F. Amblard, E. Ramat, G. Deffuant et P. Preux, 2003. Utiliser des modèles individus-centrés comme laboratoires virtuels pour identifier les paramètres d'un modèle agrégé. Actes de la quatrième conférence francophone de modélisation et simulation (MOSIM) "Organisation et Conduite d'activités dans l'Industrie et les Service". Yves Dallery, Jean-Claude Hennet et Pierre Lopez eds. SCS-Europe. p353-357. Toulouse, 23-25 avril 2003.
G. Deffuant, F. Amblard, R. Duboz et E. Ramat, 2003. Une démarche expérimentale pour la simulation individus-centrée. Actes des 9ièmes Journées de Rochebrune : Rencontres interdisciplinaires sur les systèmes complexes naturels et artificiels, p45-64. 26 Janvier - 3 Février.
R. Duboz, É. Ramat et N. Giambiasi, 2002. Utilisation du Formalisme DEVS pour la Spécification de Systèmes d'Agents Réactifs, Actes des Journées Francophone en Intelligence Artificielle Distribuées et Systèmes Multi-Agent (JFIADSMA'02), Hermes eds., p99-102.
R. Duboz, 2002, XML for the representation of semantic in model coupling, Proceedings of Artificial Intelligence, Simulation and Planning (AIS 2002), SCS, Lisbonne, pp. 267-270.
R. Duboz, É. Ramat et P. Preux, 2001. Towards a coupling of continuous and discrete formalisms in ecological modeling - influences of the choice of algorithms on results, Proceedings of 13th European Simulation Symposium, SCS, Marseille, pp. 481-487.
Book Chapter: V. Grosbois, G. Fournié, R. Duboz Quatitative methods in Principles and Methods for Evaluation of Animal Health Surveillanc.
Alpha Oumar Diallo, Véronique Chevalier, Julien Cappelle, Raphaël Duboz, Didier Fontenille, Benoit Durand. Modelling and assessment of combining gilt vaccination, vector control and pig herd management to control Japanese Encephalitis virus transmission in Southeast Asia. PLOS Neglected Tropical Diseases.
Duboz R., Gupta A.S., Rasamoelina-Andriamanivo H., Chevalier V.. Improving targeted surveillance by identifying the source of a contagious disease spreading in a trading network. In prep pour le journal Epidemics.
M. Yakovleff, J. Cappelle, V. Chevalier, R. Duboz. Japanese encephalitis in a peri-urban pig slaughterhouse of Cambodia: A deterministic meta-population model to quantify the risk of transmission to humans.
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