Publications

• Joshua Aboah, Andrea Apolloni, Raphael Duboz, Barbara Wieland, Edward Okoth, Dione Michel. Ex-ante Impact of Pest des Petits Ruminant Control on Micro and Macro Socioeconomic Indicators in Senegal: A System Dynamics Modelling Approach. PLos One : PONE-D-23-09433R1, 2023

• Sougrenoma Désiré Nana, Jean-Hugues Caffin, Raphaël Duboz, Marion Bordier. Towards an integrated surveillance of zoonotic diseases in Burkina Faso: the case of anthrax. BMC Public Health 22(1). August 2022. DOI: 10.1186/s12889-022-13878-3

• Vladimir Grosbois, Guillaume Fournié, Raphaël Duboz, Flavie Goutard, Timothée Vergne, Marisa Peyre.  Quantitative Methods to Evaluate Health Surveillance Effectiveness. BookChapter in Principles for Evaluation of One Health Surveillance: The EVA Book. Marisa Peyre, François Roger, Flavie Goutard Editors. p195 - 217. Elsevier. 2022. http://dx.doi.org/10.1007/978-3-030-82727-4_10

• Guillaume Fournié, Alexis Delabouglise, Raphaelle Metras, Younjung Kim, Raphaël Duboz. Network Analysis for Surveillance Design and Evaluation. . BookChapter in Principles for Evaluation of One Health Surveillance: The EVA Book. Marisa Peyre, François Roger, Flavie Goutard Editors. p195 - 217. Elsevier. 2022. http://dx.doi.org/10.1007/978-3-030-82727-4_11

• Pauline Ezanno; Sébastien Picault; Gaël Beaunée; Xavier Bailly; Facundo Munoz; Raphaël Duboz; Hervé Monod; Jean-François Guégan. Research perspectives on animal health in the era of artificial intelligence. Veterinary Research, 52(1), Dec. 2021. http://dx.doi.org/10.1186/s13567-021-00902-4

• Michel de Garine-Wichatitsky, Aurélie Binot, John Ward, Alexandre Caron, Arthur Perrotton, Helen Ross, Hoa Tran Quoc, Hugo Valls-Fox, Iain J. Gordon, Panomsak Promburom, Rico Ancog, Richard Kock, Serge Morand, Véronique Chevalier, Will Allen, Waraphon Phimprapha, Raphaël Duboz, Pierre Echaubard. "Health in" and "Health of" Social-Ecological Systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. Dec 2021. http://dx.doi.org/10.3389/fpubh.2020.616328

• R. Franceschini and R. Duboz. Systèmes multi-agents et DEVS, une petite histoire commune. In proceedings Les journées Francophones de la Modélisation et de la Simulation (JFMS), Cépadues eds. p40-51, 2020.

• J. Cappelle, T. Hoem, V. Hul, N. Furey, K. Nguon, S. Prigent, L. Dupon, S. Ken, C. Neung, V. Hok, L. Pring, T. Lim, S. Bumrungsri, R. Duboz, P. Buchy, S. Ly, V. Duong, A. Tarantola, A. Binot and P. Dussart. Circulation and risk perception of Nipah virus at human flying fox interfaces in Cambodia. Bulletin WHO, 98:539-547, 2020. https://www.who.int/bulletin/volumes/98/8/20-254227.pdf

• Julia Ledien, Kimsan Souv, Rithea Leang, Rekol Huy, Anthony Cousien, Muslim Peas, Yves Froehlich, Raphaël Duboz, Sivuth Ong, Veasna Duong, Philippe Buchy, Philippe Dussart, Arnaud Tarantola. An algorithm applied to national surveillance data for the early detection of major dengue outbreaks in Cambodia. PLoS ONE 14(2): e0212003. 2019. https://doi.org/10.1371/journal.pone.0212003

• Raphaël Duboz, Pierre Echaubard, Panomsak Promburom, Margaret Kilvington, Helen Ross, Will Allen, John Ward, Guillaume Deffuant, Michel de Garine-Wichatitsky, Aurélie Binot. Systems thinking in practice: participatory modelling as a foundation for integrated approaches to health. Concepts and experiences in framing, integration and evaluation of One Health and EcoHealth. Frontiers in Veterinary Sciences. 17 dec. 2018. https://doi.org/10.3389/fvets.2018.00303

• Bernard Zeigler, Mamadou Kaba Traore, Grégory Zacharewicz and Raphaël Duboz. Value-based Learning Healthcare Systems: Integrative modelling and simulation. IET book. Nov. 2018. ISBN: 978-1-78561-326-5

• Juliette Di Francesco, Rithy Choeung, Borin Peng, Long Pring, Senglong Pang, Raphaël Duboz, Sivuth Ong, San Sorn, Arnaud Tarantola, Didier Fontenille, Veasna Duong, Philippe Dussart, Véronique Chevalier, and Julien Cappelle. Comparison of the dynamics of Japanese encephalitis virus circulation in sentinel pigs between rural and peri-urban settings in Cambodia. Accepted in PLoS NTD. 2018. https://doi.org/10.1371/journal.pntd.0006644

• Alpha Oumar II Diallo, Véronique Chevalier, Julien Cappelle, Veasna Duong, Didier Fontenille, Raphaël Duboz. Does direct transmission between pigs contribute to Japanese Encephalitis virus circulation? A modelling approach in Cambodia. To appear in Plos One. 2018 http://dx.doi.org/10.1371/journal.pone.0201209

• R. Duboz and A. Binot. Participatory modelling and simulation to adress health issues. in Report Agropolis foundation: Complex Systems from BIology to Landscapes. p65. num 23, June, 2018. French Version

• Traoré Mamadou, Zacharewicz Gregory, Duboz Raphaël, Zeigler Bernie. Modeling and Simulation Framework for Value-based Healthcare Systems. Simulation,Transactions of the Society for Modeling and Simulation International. 4th June, 2018. http://dx.doi.org/10.1177/0037549718776765

• Benjamin Roche, Raphaël Duboz. Individual-based model for public health. Book Chapter in Handbook of Statistics 37. Disease Modelling and Public Haelth, part B, p347-365, Arni S.R. Srinivasa Rao, Saumyadipta Pyne, C.R. Rao, eds, Elsevier, 2017 ISBN: 9780444639752. 

• Baudon E., Fournié G., Hiep D.T., Pham T.T.H., Duboz R., Gély M., Peiris M., Cowling B.J., Ton V.D., Peyre M.I.. 2017. Analysis of swine movements in a province in Northern Vietnam and application in the design of surveillance strategies for infectious diseases. Transboundary and Emerging Diseases, 411 (424) : p. 411-424. http://dx.doi.org/10.1111/tbed.12380

• Duboz R. and Binot A. Animal and human health: tackling uncertainty through participatory modelling and simulation. 2017. Perspective - Cirad (41), 4 p. http://dx.doi.org/10.18167/agritrop/00043

• Cappelle J., Duong V., Pring L., Kong L., Yakovleff M., Prasetyo D., Peng B., Choeung R., Duboz R., Ong S., Sorn S., Dussart P., Tarantola A., Buchy P., Chevalier V. 2016. Intensive circulation of Japanese Encephalitis Virus in peri-urban sentinel pigs near Phnom Penh, Cambodia. PLoS Neglected Tropical Diseases, 10 (12) : e0005149 (14 p.).
  http://dx.doi.org/10.1371/journal.pntd.0005149

• Delabouglise A., Antoine-Moussiaux N., Tatong D., Chumkaeo A., Binot A., Fournié G., Pilot E., Phimpraphi W., Kasemsuwan S., Paul M., Duboz R., Salem G., Peyre M.I.. 2016. Cultural practices shaping zoonotic diseases surveillance: The case of highly pathogenic avian influenza and Thailand native chicken farmers. Transboundary and Emerging Diseases : 12 p. http://dx.doi.org/10.1111/tbed.12506

• Molia S., Boly I.A., Duboz R., Coulibaly B., Guitian J., Grosbois V., Fournié G., Pfeiffer D.U.. 2016. Live bird markets characterization and trading network analysis in Mali: implications for the surveillance and control of avian influenza and Newcastle disease. Acta Tropica, 155 : p. 77-88. http://dx.doi.org/10.1016/j.actatropica.2015.12.003

• Aurelie Binot · Raphaël Duboz · Panomsak Promburom · Waraphon Phimpraphai · Julien Cappelle · Claire Lajaunie · Flavie Goutard · Tanu Pinyopummintr · Muriel Figuié · François. A framework to promote collective action within the One Health community of practice: Using participatory modelling to enable interdisciplinary, cross-sectoral and multi-level integration. 2015, One Health, Volume 1, pages 44–48. doi:10.1016/j.onehlt.2015.09.001

• Baudon, E., Fournié, G., Hiep, D. T., Pham, T. T. H., Duboz, R., Gély, M. Peiris, M. Cowling, B. J. Ton, V. D., Peyre, M. Analysis of swine movements in a province in Northern Vietnam and application in the design of surveillance strategies for infectious diseases. 2015. Transboundary and Emerging Diseases. p1865-1682. doi:10.1111/tbed.12380

• N. Pradhan, H. Habib, M. Venkatappa, T. Ebbers, R. Duboz, O. Shipin Framework Tool for a Rapid Cumulative Effects Assessment: Case of a Prominent Wetland in Myanmar. Journal of Environmental Assessment and Monitoring. 2015 Jun;187(6):4508. doi:10.1007/s10661-015-4508-4

• When private actors matter: Information-sharing network and surveillance of Highly Pathogenic Avian Influenza in Vietnam. A. Delabouglise, T.H. Dao, D.B. Truong, T.T. Nguyen, N.T.X. Nguyen, R. Duboz, G. Fournié, N. Antoine-Moussiaux, V. Grosbois, D.T. Vu, T.H. Le, V.K. Nguyen, G. Salem, M. Peyre. Acta Tropica, Volume 147, July 2015, Pages 38-44; doi:10.1016/j.actatropica.2015.03.025

• F L Goutard, A Binot, R Duboz, H Rasamoelina-Andriamanivo, M Pedrono, D Holl, M I Peyre, J Cappelle, V Chevalier, M Figuié, S Molia, F L Roger. How to Reach the Poor? Surveillance in low-income countries, lessons from experiences in Cambodia and Madagascar. Preventive Veterinary Medicine. 02/2015; doi:10.1016/j.prevetmed.2015.02.014

• Rasamoelina-Andriamanivo H., Duboz R., Lancelot R., Maminiaina O.F., Jourdan M., Rakotondramaro T.M.C., Rakotonjanahary S.N., Servan de Almeida R., Rakotondravao, Durand B., Chevalier V.. 2014. Description and analysis of the poultry trading network in the Lake Alaotra region, Madagascar: Implications for the surveillance and control of Newcastle disease. Acta tropica, 135 : 10-18. [20140417]. http://dx.doi.org/10.1016/j.actatropica.2014.03.008

• Ratchaphon Samphutthanon, Nitin Kumar Tripathi, Sarawut Ninsawat and Raphael Duboz. Spatio-Temporal Distribution and Hotspots of Hand, Foot and Mouth Disease (HFMD) in Northern Thailand. Int. J. Environ. Res. Public Health 2014, 11(1), 312-336; doi:10.3390/ijerph110100312

• Lucie Collineau, Raphaël Duboz, Mathilde Paul, Marisa Peyre, Flavie Goutard, Sinel Holl and François Roger. Application of loop analysis for the qualitative assessment of surveillance and control in veterinary epidemiology. Emerging Themes in Epidemiology 2013, 10:7 http://dx.doi.org/10.1186/1742-7622-10-7

• R. Duboz. Weighted Activity and Costing of Surveillance and Control in Animal Epidemiology. Activity-Based Modeling & Simulation ACTIMS’2012, May 28 - June 1, Cargese, France, ITM Web of Conferences 1, 01002, 2013. pdf here.

• Raphaël Duboz et Jean-Pierre Müller. Modélisation des socio-écosystèmes. Instrumenter le dialogue multidisciplinaire. Book chapter in Epistémologie de la modélisation et de la simulation, p865-896. dir. Franck Varenne & Marc Silberstein, Éditions Matériologiques, 974p, 2013. Order here

• Kishoj Bajracharya and Raphael Duboz. Comparison of three agent-based platforms with a simple epidemiological model (WIP). Theory of Modeling & Simulation Symposium, SpringSim Multi-Conference, p362-367. Sans Diego CA, USA, April, 7-10 2013

• Nicolas G., Durand B., Duboz R., Rakotondravao R., Chevalier V. Description and analyses of trading network of cattle on the Highlands of Madagascar and Potential role in the diffusion of Rift Valley Fever Virus. Available online 4 January 2013, Acta Tropica. http://dx.doi.org/10.1016/j.actatropica.2012.12.013

• Raphaël Duboz and Jean-Christophe Soulié. Modeling and simulation of living systems as systems of systems. Book Chapter in Guide to Modeling and Simulation of Systems of Systems, Simulation Foundations, Methods and Applications. Bernard P. Zeigler and Hessam S. Sarjoughian. L.G. Birta series editor, Springer,-Verlag London eds, 2013. http://dx.doi.org/10.1007/978-0-85729-865-2_1

• Bonté B, Mathias J-D, Duboz R. Moment Approximation of Infection Dynamics in a Population of Moving Hosts. PLoS ONE 7(12): e51760, 2012. doi:10.1371/journal.pone.0051760

• Magali Teurlai, Rekol Huy, Bernard Cazelles, Raphaël Duboz, Christophe Baehr and Sirenda Vong. Can Human Movements Explain Heterogeneous Propagation of Dengue Fever in Cambodia? PLoS Negl Trop Dis 6(12): e1957. 2012. http://dx.doi.org/10.1371%2Fjournal.pntd.0001957

• B. Bonté, R. Duboz and J.P. Muller. Modeling the Minsky triad: A Framework to Perform Reflexive M&S Studies. In the proceedings of the Winter Simulation Conference (ACM/IEEE), C. Laroque, J. Himmelspach, R. Pasupathy, O. Rose, and A. M. Uhrmacher, eds. Berlin, Germany December 9-12 2012. pdf here.

• Emilie Vallée, Agnès Waret-Szkuta, Hassen Chaka, Raphaël Duboz, Melesse Balcha, Flavie Goutard. Analysis of traditional poultry trader networks to improve risk-based surveillance. The Veterinary Journal, available online 3 July 2012 http://dx.doi.org/10.1016/j.tvjl.2012.05.017.

• Duboz R., Bonté B., Quesnel G. 2012. Vers une spécification des modèles de simulation de systèmes complexes. Studia Informatica Universalis. 10: 7-37

• Gauthier Quesnel, Eric Ramat, Jean-Christophe Soulié, David Duvivier, Raphaël Duboz. 2012. Virtual Laboratory Environment : un environnement de multimodélisation et de simulation de systèmes complexes. Studia Informatica Universalis. 10: 205-234

• Duboz R., Versmisse D., Travers M., Ramat E., Shin Y.J. 2010. Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model. Ecological modelling, 221 (5) : 840-849.

• Quesnel G., Duboz R., Ramat E. 2009. The Virtual Laboratory Environment. An operational framework for multi-modelling, simulation and analysis of complex dynamical systems. Simulation modelling practice and theory, 17 (4) : 641-653.

• Bonte B., Duboz R., Quesnel G., Müller J.P. 2009. Recursive simulation and experimental frame for multiscale simulation. In proceedings of the Summer Computer Simulation Conference, p164-172, 2009-07-13/2009-07-16, Istambul, Turque

• R. Duboz, D. Versmisse, G. Quesnel, A. Muzzy and É. Ramat, 2006. Specification of Dynamic Structure Discrete Event Multiagent Systems, In the conference proceedings of Agent Directed Simulation (Spring Simulation Multiconference) April 2-6, Huntsville, Alabama, USA.

• R. Duboz and C. Cambier, 2005. Small world properties in a DSDEVS model of ecosystem, In proceedings of the Open International Conference on Modeling and Simulation - OICMS 2005, Clermont-Ferrrand, France, pp 65-71.

• G. Quesnel, R. Duboz, D. Versmisse and É. Ramat, 2005. DEVS Coupling of Spatial and Ordinary Differential Equations: VLE framework, In proceedings of the Open International Conference on Modeling and Simulation - OICMS 2005, Clermont-Ferrrand, France, pp 281-294.

• G. Quesnel, R. Duboz and É. Ramat, 2004. DEVS wrapping: A study case, In proceedings of the CMS conference, 28-30 octobre, Genoa, Italy, pp 374-382.

• R. Duboz, É. Ramat et P. Preux. 2003. Scale transfer modelling: Using emergent computation for coupling an ordinary differential equation system with a reactive agent model, Systems Analysis Modelling  Simulation. Taylor and Francis eds. Vol. 43, No. 6, June 2003, pp. 793-814.

• Q. Quesnel, R. Duboz, É. Ramat. 2003.Comparaison d'approches de simulations distribuées à évènements discrets d'entités spatialisées : ISDM revue en ligne : http://isdm.univ-tln.fr/ http://isdm.univ-tln.fr/PDF/isdm13/isdm13a125_quesnel.pdf

• R. Duboz, F. Amblard, E. Ramat, G. Deffuant et P. Preux, 2003. Utiliser des modèles individus-centrés comme laboratoires virtuels pour identifier les paramètres d'un modèle agrégé. Actes de la quatrième conférence francophone de modélisation et simulation (MOSIM) "Organisation et Conduite d'activités dans l'Industrie et les Service". Yves Dallery, Jean-Claude Hennet et Pierre Lopez eds. SCS-Europe. p353-357. Toulouse, 23-25 avril 2003.

• G. Deffuant, F. Amblard, R. Duboz et E. Ramat, 2003. Une démarche expérimentale pour la simulation individus-centrée. Actes des  9ièmes Journées de Rochebrune : Rencontres interdisciplinaires sur les systèmes complexes naturels et artificiels, p45-64. 26 Janvier - 3 Février.

• R. Duboz, É. Ramat et N. Giambiasi, 2002. Utilisation du Formalisme DEVS pour la Spécification de Systèmes d'Agents Réactifs, Actes des Journées Francophone en Intelligence Artificielle Distribuées et Systèmes Multi-Agent (JFIADSMA'02), Hermes eds., p99-102.

• R. Duboz, 2002, XML for the representation of semantic in model coupling, Proceedings of Artificial Intelligence, Simulation and Planning (AIS 2002), SCS, Lisbonne, pp. 267-270.

• R. Duboz, É. Ramat et P. Preux, 2001. Towards a coupling of continuous and discrete formalisms in ecological modeling - influences of the choice of algorithms on results, Proceedings of 13th European Simulation Symposium, SCS, Marseille, pp. 481-487.

Submitted

• -

In prep

• RED network. Repoducubility of Agent based Models

• RED network. Bridging Agent-Based Simulation with Theory of Modelling and Simulation

• Marion Bordier, Nicolas Antoine-Moussiaux, Raphaël Duboz. Intégrer les savoirs pour développer des stratégies appropriées de prévention et de contrôle des maladies animales. in book SHS & santé animale, chap. Approches participatives et co-construction des dispositifs de gestion. QUAE ed.
  

• Duboz R., Gupta A.S., Rasamoelina-Andriamanivo H., Chevalier V.. Improving targeted surveillance by identifying the source of a contagious disease spreading in a trading network. In prep pour le journal Epidemics.