Selected rice publications

  1. Frouin J, Languillaume A, Mas J, Mieulet D, Boisnard A, Labeyrie A, Bettembourg M, Bureau C, Lorenzini E, Portefaix M, Turquay P, Vernet A, Perin C, Ahmadi N, Courtois B (2018) Tolerance to mild salinity stress in japonica rice: a genome-wide association mapping study highlights calcium signaling and metabolism genes. PLOS ONE 13(1): e0190964. DOI: 10.1371/journal.pone.0190964
  2. Montazeaud G, Violle C, Fréville H, Luquet D, Ahmadi N, Courtois B, Bouhaba I, Fort F (2017) Crop mixtures: does niche complementarity hold for belowground resources? An experimental test using rice genotypic pairs. Plant Soil. DOI: 10.1007/s11104-017-3496-2
  3. Bettembourg M, Dal-Soglio M, Bureau C, Vernet A, Dardoux A, Portefaix M, Bes M, Meynard D, Cayrol B, Perin C, Courtois B, Ma JF, Dievart A ( 2017) Root cone angle is enlarged in docs1 LRR-RLK mutants in rice. Rice. DOI 10.1186/s12284-017-0190-1
  4. Bettembourg M, Dardou A, Audebert A, Thomas E, Frouin J, Guiderdoni E, Ahmadi N, Perin C, Dievart A, Courtois B (2017) Genome-wide association mapping for root cone angle in rice. Rice 10:45. doi: 10.1186/s12284-017-0184-z
  5. Lafarge T, Bueno C, Frouin J, Jacquin L, Courtois B, Ahmadi N (2017) Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses. PLOS ONE 12(2): e0171254. doi: 10.1371/journal.pone.0171254
  6. Raboin LM, Ballini E, Tharreau D, Ramanantsoanirina A, Frouin J, Courtois B, Ahmadi N (2016) Association mapping of resistance to rice blast in upland field conditions. Rice 9:59. doi: 10.1186/s12284-016-0131-4
  7. Mercier R, Mieulet D, Jolivet S, Rivard M, Cromer L, Vernet A, Mayonove P, Pereira L, Droc G, Courtois B, Guiderdoni E (2016) Turning rice meiosis into mitosis. Cell Research. doi: 10.1038/cr.2016.117
  8. Dingkuhn M, Sow A, Manneh B, Radanielina T, Raboin LM, Dusserre J, Ramantsoanirina A, Shrestha S, Ahmadi N, Courtois B (2015) Field phenomics for response of a rice diversity panel to eight contrasting climates in Senegal and Madagascar. 1. Plant phenological traits. Field Crop Research 183:342-355. doi: 10.1016/j.fcr.2015.07.027
  9. Dingkuhn M, Sow A, Manneh B, Radanielina T, Raboin LM, Dusserre J, Ramantsoanirina A, Shrestha S, Ahmadi N, Courtois B (2015) Field phenomics for response of a rice diversity panel to eight contrasting climates in Senegal and Madagascar. 1. Plant phenological traits. Field Crop Research 183:342-355. doi: 10.1016/j.fcr.2015.07.027
  10. Grenier C, Cao TV, Ospina Y, Quintero C, Chatel MH, Tohme J, Courtois B, Ahmadi N (2015) Accuracy of genomic selection in a rice synthetic population developed for recurrent selection. PLoS ONE 10 (8):e0136594. doi: 10.1371/journal.pone.0136594
  11. Rebolledo MC, Dingkuhn M, Courtois B,  Gibon Y, Clément-Vidal A, Cruz D, Duitama J, Lorieux M,Luquet D (2015) Phenotypic and genetic dissection of component traits for early vigor in rice using plant growth modelling, sugar content analyses and association mapping. J Exp Bot doi: 10.1093/jxb/erv258
  12. Gómez-Ariza J, Brambilla V, Shrestha R, Galbiati F, Pappolla A, Courtois B, Fornara F (2015) Loss of floral repressor function adapts rice to higher latitudes in Europe. J Exp Bot 66(7):2027-2039. doi:10.1093/jxb/erv004
  13. Lartaud M, Perin C, Courtois B, Thomas E, Henry S, Bettembourg M, Divol F, Lanau N, Artus F, Bureau C, Verdeil J-L, Sarah G, Guiderdoni E, Dievart A (2014) PHIV-RootCell, a supervised image analysis tool for rice root anatomical parameter quantification. Frontiers in Plant Science 5:790 doi: 10.3389/fpls.2014.00790
  14. Mai CD CM, Phung NTP, To HTT, Gonin M, Hoang GT, Nguyen KL, Do VN, Courtois B, Gantet P (2014)  Genes controlling root development in rice. Rice 7:30. doi:10.1186/s12284-014-0030-5
  15. Ahmadi N, Audebert A, Bennett M, Bishopp A, Costa de Oliveira A, Courtois B, Diedhiou A, Diévart A, Gantet P, Ghesquière A, Guiderdoni E, Henry A, Inukai Y, Kochian L, Laplaze L, Lucas M, Luu D, Manneh B, Mo X, Muthurajan R, Périn C, Price A, Robin S, Sentenac H,  Sine B, Uga Y, Véry AA, Wissuwa M, Wu P, Xu J (2014) The roots of future rice harvests. Rice 7:29. doi:10.1186/s12284-014-0029-y
  16. Phung NTP, Mai CD, Mournet P, Frouin J, Droc G, Ta NT, Jouannic S, Tran HTT, Do VN, Gantet P, Courtois B (2014) Characterization of a panel of Vietnamese rice varieties using DArT and SNP markers in view of association mapping. BMC Plant Biology 14:371 doi: 10.1186/s12870-014-0371-7
  17. Gómez-Ariza J, Brambilla V, Shrestha R, Galbiati F, Pappolla A, Courtois B, Fornara F (2015) Loss of floral repressor function adapts rice to higher latitudes in Europe.  J Exp Bot 66 (7): 2027-2039 :doi:10.1093/jxb/erv004
  18. Frouin J, Filloux D, Taillebois J, Grenier C, de Lamotte F, Verdeil JL, Courtois B, Ahmadi N (2014) Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemas. Molecular Breeding 33 (3): 555-567
  19. Courtois B, Audebert A, Dardou A, Roques S, Ghneim Herrera T, Droc G, Frouin J, Rouan L, Gozé E, Kilian A, Ahmadi N, Dingkuhn M (2013) Genome-wide association mapping of root traits in a japonica rice panel. PLoS ONE 8(11): e78037
  20. Rebolledo MC, Luquet D, Courtois B, Henry A, Soulié J-C, Rouan L, Dingkhun M (2013) Can early vigor occur in combination with drought tolerance and efficient water use in rice genotypes? Functional Plant Biology 40:582-594
  21. Negrão S, Almadanim MC, Pires IS, Abreu IA, Maroco J, Courtois B, Gregorio G, McNally K, Oliveira MM (2013) New allelic variants found in key rice salt-tolerance genes: an association study. Plant Biotechnology Journal 11:87-100
  22. Myint KK, Courtois B, Risterucci A-M, Frouin J , Soe K, Maung Thet K, Vanavichit A, Glaszmann  J-C (2012) Specific patterns of genetic diversity among aromatic rice varieties in Myanmar. Rice 5:20-33.
  23. Courtois B, Frouin J, Greco R, Bruschi G, Droc G,  Hamelin C, Ruiz M, Clément G,  Evrard J-C, van Coppenole S, Katsantonis D, Oliveira M, Negrão S, Matos C, Cavigiolo S, Lupotto E, Piffanelli P,  Ahmadi N (2012) Genetic diversity and population structure in a European collection of rice. Crop Science 52:1663-1675.
  24. Ahmadi N, Negrao S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschii G, Greco R, Oliveira MM, Piffanelli P, Courtois B (2011) Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Theor Appl Genet 123 (6):881-895
  25. Courtois B, Greco R, Bruschi G, Frouin J, Ahmadi N, Droc G, Hamelin C, Ruiz M, Evrard JC, Katsantonis D, Oliveira M, Negrao S, Cavigiolo S, Lupotto E, Piffanelli P (2011) Molecular characterization of the European rice collection in view of association mapping. Plant Genetic Resources Characterization and Utilization 9(2): 33-235
  26. Negrao S, Courtois B, Ahmadi N, Abreu I, Saibo N, Oliveira MM (2011) Recent updates on salinity stress in rice: from physiological to molecular responses. Critical Review in Plant Science 30:329-377
  27. Philippe R, Courtois B, McNally KL, Mournet P, El-Malki R, Le Paslier MC, Fabre D, Billot C, Brunel D, Glaszmann J-C, This D (2010) Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives. Theor Appl Genet 121:769-787
  28. This D, Comstock J, Courtois B, Xu Y, Ahmadi N, Vonhof WM, Fleet C, Setter T, McCouch S (2010) Genetic analysis of water-use efficiency in rice (Oryza sativa L.) at the leaf-level. Rice 3 (1):72
  29. Coudert Y, Périn C, Courtois B, Khong NG, Gantet P (2010) Genetic control of root development in rice, the model cereal. Trends in Plant Science 15(4):219-226
  30. Cairns JE, Namuco OS, Torres R, Simborio FA, Courtois B, Aquino GA, Johnson DE (2009) Investigating early vigour in upland rice (Oryza sativa L.): Part II. Identification of QTLs controlling early vigour under greenhouse and field conditions. Field Crop Research 113 (3): 207-217
  31. Khowaja FS, Norton GJ, Courtois B, Price AH (2009) Improved resolution in the position of drought-related QTLs in a single mapping population of rice by meta-analysis. BMC Genomics 10 (276): 1-14.
  32. Courtois B, Ahmadi N, Khowaja FS, Price AH, Rami J-F, Frouin J, Hamelin C, Ruiz M (2009) Rice root genetic architecture: Meta-analysis from a drought QTL database. Rice 2 (2-3): 115-128.
  33. Petit J, Bourgeois E, Stenger W, Bes M, Droc G, Meynard D, Courtois B, Ghesquière A, Sabot F, Panaud O, Guiderdoni E (2009) Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus. Molecular Genetics and Genomics 282 (6): 633-652.
  34. Ballini E, Morel J-B, Droc G, Price AH, Courtois B, Notteghem J-L, Tharreau D (2008) A Genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Molecular Plant-Microbe Interactions 21 (7): 859-868
  35. De Alencar Figueiredo LF, Calatayud C, Dupuits C, Billot C, Rami J-F, Brunel D, Perrier X, Courtois B, Deu M, Glaszmann J-C (2008) Phylogeographic evidence of crop neodiversity in sorghum. Genetics 179 (2): 997-1008
  36. Jensen LB, Courtois B, Olofsdotter M (2008) Quantitative trait loci analysis of allelopathy in rice. Crop science 48 (4): 1459-1469
  37. Larmande P, Gay C, Lorieux M, Perin C, Bouniol M, Droc G, Sallaud C, Perez P, Barnola I, Biderre-Petit C, Martin J, Morel J-B, Johnson AAT, Bourgis F, Ghesquière A, Ruiz M, Courtois B, Guiderdoni E (2008) Oryza Tag Line, a phenotypic mutant database for the genoplante rice insertion line library. Nucleic Acids Research 36: 1022-1027
  38. Letort V, Mahe P, Cournède P-H, De Reffye P, Courtois B (2008) Quantitative genetics and functional-structural plant growth models: Simulation of quantitative trait loci detection for model parameters and application to potential yield optimization. Annals of Botany 101 (8): 1243-1254
  39. Barry MB, Pham J-L, Courtois B, Billot C, Ahmadi N (2007) Rice genetic diversity at farm and village levels and genetic structure of local varieties reveal need for in situ conservation. Genetic Resources and Crop Evolution 54: 1675-1690
  40. Barry MB, Pham JL, Noyer JL, Billot C, Courtois B, Ahmadi N (2007) Genetic diversity of the two cultivated rice species (O. sativa and O. glaberrima) in Maritime Guinea. Evidence for interspecific recombination. Euphytica 154 (1-2): 127-137
  41. Atlin GN, Lafitte RH, Tao D, Laza M, Amante M, Courtois B (2006) Developing rice cultivars for high-fertility upland systems in the Asian tropics. Field Crops Research, 97: 43-52
  42. Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel J-B, Dievart A, Courtois B, Guiderdoni E, Perin C (2006) OryGenesDB: A database for rice reverse genetics. Nucleic acids research, 34: 736-740
  43. Lafitte RH, Price AH, Courtois B (2004) Yield response to water deficit in an upland rice mapping population: associations among traits and genetic markers. Theoretical and Applied Genetics 109 (6): 1237-1246
  44. Ruiz M, Rouard M, Raboin LM, Lartaud M, Lagoda P, Courtois B (2004) TropGENE-DB, a multi-tropical crop formation system. Nucleic Acids Research, 32: D364-D367
  45. Wu JL, Sinha PK, Variar M, Zheng KL, Leach JE, Courtois B, Leung H (2004) Association between molecular markers and blast resistance in an advanced backcross population of rice. Theoretical and Applied Genetics 108 (6): 1024-1032
  46. Courtois B, Shen L, Petalcorin W, Carandang S, Mauleon RP, Li ZK (2003) Locating QTLs controlling constitutive root traits in the rice population IAC 165 2 Co39. Euphytica, 134 (3): 335-345
  47. Hittalmani S, Huang N, Courtois B, Venuprasad R, Shashidhar HE, Zhuang JY, Zheng KL, Liu GF, Wang GC, Sidhu JS, Srivantaneeyakul S, Singh VP, Bagali PG, Prasanna HC, McLaren G, Khush GS (2003) Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia. Theoretical and Applied Genetics 107: 679-690
  48. Kondo M, Pablico PP, Aragones DV, Agbisit R, Abe J, Morita S, Courtois B (2003) Genotypic and environmental variations in root morphology in rice genotypes under upland field conditions. Plant and Soil, 255 (1): 189-200
  49. Li ZK, Yu SB, Lafitte RH, Huang N, Courtois B, Hittalmani S, Vijayakumar CHM, Liu GF, Wang GC, Shashidhar HE, Zhuang JY, Zheng KL, Singh VP, Sidhu JS, Srivantaneeyakul S, Khush GS (2003) QTL x environment interactions in rice. I. Heading date and plant height. Theoretical and Applied Genetics 108 (1): 141-153
  50. Robin S, Pathan MS, Courtois B, Lafitte RH, Carandang S, Lanceras S, Amante M, Nguyen HT, Li ZK (2003) Mapping osmotic adjustment in an advanced back-cross inbred population of rice. Theoretical and Applied Genetics, 107: 1288-1296
  51. Lafitte RH, Courtois B (2002) Interpreting cultivar x environment interactions for yield in upland rice: assigning value to drought-adaptive traits. Crop Science 42 (5): 1409-1420
  52. Lafitte RH, Courtois B, Arraudeau M (2002) Genetic improvment of rice in aerobic systems: Progress from yield to genes. Field Crops Research, 75: 171-190
  53. Olofsdotter M, Jensen LB, Courtois B (2002) Improving crop competitive ability using allelopathy, an example from rice. Plant Breeding, 121: 1-9
  54. Price A H, Townend J, Jones MP, Audebert A, Courtois B (2002) Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa. Plant Molecular Biology, 48: 683-695
  55. Bach Jensen L, Courtois B, Shen L, Li ZK, Olofsdotter M, Mauleon RP (2001) Locating genes controlling allelopathic effects against barnyardgrass in upland rice. Agronomy Journal, 93 (1): 21-26
  56. Courtois B, Bartholome B, Chaudhary D, McLaren G, Misra CH, Mandal NP, Pandey S, Paris T, Piggin C, Prasad K, Roy AT, Sahu RK, Sahu VN, Sarkarung S, Sharma SK, Singh A, Singh HN, Singh ON, Singh NK, Singh RK, Singh RK, Singh S, Sinha PK, Sisodia BVS, Takhur R (2001) Comparing farmers and breeders rankings in varietal selection for low-input environments: A case study of rainfed rice in eastern India. Euphytica 122 (3): 537-550
  57. Shen L, Courtois B, McNally KL, Robin S, Li Z (2001) Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection. Theoretical and Applied Genetics 103: 75-83
  58. Courtois B, McLaren G, Sinha PK, Prasad K, Yadav R, Shen L (2000) Mapping QTLs associated with drought avoidance in upland rice. Molecular Breeding (6): 55-66
  59. Zheng HG, Babu C, Pathan MS, Ali L, Huang N, Courtois B, Nguyen HT (2000) Quantitative trait loci for root-penetration ability and root thickness in rice: Comparison of genetic backgrounds. Genome 43: 53-61
  60. Price AH, Courtois B (1999) Mapping QTLs associated with drought resistance in rice: progress, problems ans prospects. Plant Growth Regulation (29): 123-133
  61. Kirk GJD, George T, Courtois B, Senadhira D (1998) Opportunities to improve phosphorus efficiency and soil fertility in rainfed lowlad and upland rice ecosystems. Field Crops Research 56 (1/2): 73-92
  62. Yadav R, Courtois B, Huang N, McLaren G (1997) Mapping genes controlling root morphology and root distribution in a double-haploid population of rice. Theoretical and Applied Genetics, 94: 619-632
  63. Huang N, Courtois B, Khush GS, Lin H, Wang G, Wu P, Zheng K (1996) Association of quantitative trait loci for plant height with major dwarfing genes in rice. Heredity, 77: 130-137
  64. Trébuil G, Courtois B, Herrera W (1996) Assessment of upland rice rooting depth: does the herbicide injection technique work ? Journal of Agronomy and Crop Science, 177: 85-93
  65. Courtois B (1993) Comparison of single-seed descent and anther culture-derived lines of three single crosses of rice. Theoretical and Applied Genetics 85 (5): 625-631
  66. Guiderdoni E, Glaszmann J-C, Courtois B (1989) Segregation of 12 isozyme genes among doubled-haploid lines derived from a japonica x indica cross of rice. Euphytica 42:45-53


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